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Human Protein Atlas umap plots
Umap Plots, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/umap+plot/plots+umap/pm41407857-893-6-25
Average 86 stars, based on 1 article reviews
umap plots - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

other:

Article Title: Pan-cancer analysis reveals potential for synergy between SERPINA1 molecular targeting and macrophage-related immunotherapy
Article Snippet: Downscaling and subsequent clustering analysis of 25 different cell populations in breast cells were then performed and visualized by UMAP (Uni ed Flow Approximation and Projection) plot using the Human Protein Atlas database.

Article Title: SERPINA1 is a new frontier in cancer immunotherapy and drug targeting by pan-cancer analysis.
Article Snippet: Downscaling and subsequent clustering analysis of 25 different cell populations in breast cells were then performed and visualized by UMAP (Unified Flow Approximation and Projection) plot using the Human Protein Atlas database.

RNA Expression:

Article Title: Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans
Article Snippet: .. RNA expression of TCAF2 (left) and TRPM8 (right) in the single cell type clusters identified in the liver tissue visualized by a UMAP plot (top) and a bar chart (bottom) using the Human Protein Atlas database (https://www.proteinatlas.org/). ..

Article Title: Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans
Article Snippet: .. RNA expression of TCAF2 (left) and TRPM8 (right) in the single-cell-type clusters identified in the prostate tissue visualized by a UMAP plot (top) and a bar chart (bottom) using the Human Protein Atlas database (https://www.proteinatlas.org/). ..

Article Title: Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans
Article Snippet: .. RNA expression of TCAF2 (left) and TRPM8 (right) in the single cell type clusters identified in the prostate tissue visualized by a UMAP plot (top) and a bar chart (bottom) using the Human Protein Atlas database (https://www.proteinatlas.org/). ..

Article Title: RNF2 mediates pulmonary fibroblasts activation and proliferation by regulating mTOR and p16-CDK4-Rb1 signaling pathway.
Article Snippet: Background Pulmonary fibrosis (PF) is a chronic, progressive interstitial lung disease with unknown etiology, associated with increasing morbidity and pessimistic prognosis.. Pulmonary fibroblasts (PFbs) are the key effector cells of PF, in which abnormal activation and proliferation is an important pathogenesis of PF.. Ring finger protein 2 (RNF2), is identified as the catalytic subunit of poly-comb repressive complex 1, which is closely related to occurrence and development of lung cancer, but its function in PF has not been revealed.

Expressing:

Article Title: COL15A1 interacts with P4HB to regulate the growth and malignancy of HepG2.2.15 cells.
Article Snippet: .. In order to explore the specific function of COL15A1 in the liver, firstly the expression of COL15A1in the single cell type clusters was identified in liver tissue visualized by a UMAP plot in the Human Protein Atlas, and the shared results showed that COL15A1 was not widely expressed in various cell types of liver (Fig. 2A). ..

Single Cell:

Article Title: COL15A1 interacts with P4HB to regulate the growth and malignancy of HepG2.2.15 cells.
Article Snippet: .. In order to explore the specific function of COL15A1 in the liver, firstly the expression of COL15A1in the single cell type clusters was identified in liver tissue visualized by a UMAP plot in the Human Protein Atlas, and the shared results showed that COL15A1 was not widely expressed in various cell types of liver (Fig. 2A). ..

Article Title: CD52 mRNA expression predicts prognosis and response to immune checkpoint blockade in melanoma.
Article Snippet: .. We included uniform manifold approximation and projection (UMAP) plot (Becht et al., 2018) as provided by The Human Protein Atlas, version 23.0 (https:// www. prote inatl as. org/ ENSG0 00001 69442 D52/ single+ cell+ type/ skin% 20343 21199 ; Karlsson et al., 2021). ..

Article Title: RNF2 mediates pulmonary fibroblasts activation and proliferation by regulating mTOR and p16-CDK4-Rb1 signaling pathway.
Article Snippet: Background Pulmonary fibrosis (PF) is a chronic, progressive interstitial lung disease with unknown etiology, associated with increasing morbidity and pessimistic prognosis.. Pulmonary fibroblasts (PFbs) are the key effector cells of PF, in which abnormal activation and proliferation is an important pathogenesis of PF.. Ring finger protein 2 (RNF2), is identified as the catalytic subunit of poly-comb repressive complex 1, which is closely related to occurrence and development of lung cancer, but its function in PF has not been revealed.



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Image Search Results


Correlation of IFC features with phenotypic features (A) Correlation plot showing the correlation between IFC features and clinical phenotypes. All clinical features were converted to binary parameters (Yes = Present, No=Not present) and correlation was calculated using Spearman’s correlation. The color coding and dot size correlate with Spearman’s rho coefficient. (B) All significant correlations have been plotted as a boxplot. For the boxplots, the values of each of the five features ( <xref ref-type=Table 1 ) were normalized against the mean of the healthy control taken along within the same experiment and converted to percentages. Statistics were calculated using Welsch’s t test. The black line indicates the median value, the lower and upper hinges correspond to the 25th and 75th percentiles. The upper and lower whisker extend to 1.5∗IQR. (C) Showing the UMAP plots from Figures 2 C and A. The nodes are colored according to the presence of neuropathy (Yes, No, NA). NA means that the specific feature was not assessed in patients. Statistical significance between the two clusters was calculated using Fisher’s exact test. Neuropathy was the only clinical feature that had a significant association with one of the clusters. " width="100%" height="100%">

Journal: iScience

Article Title: Imaging flow cytometry reveals divergent mitochondrial phenotypes in mitochondrial disease patients

doi: 10.1016/j.isci.2024.111496

Figure Lengend Snippet: Correlation of IFC features with phenotypic features (A) Correlation plot showing the correlation between IFC features and clinical phenotypes. All clinical features were converted to binary parameters (Yes = Present, No=Not present) and correlation was calculated using Spearman’s correlation. The color coding and dot size correlate with Spearman’s rho coefficient. (B) All significant correlations have been plotted as a boxplot. For the boxplots, the values of each of the five features ( Table 1 ) were normalized against the mean of the healthy control taken along within the same experiment and converted to percentages. Statistics were calculated using Welsch’s t test. The black line indicates the median value, the lower and upper hinges correspond to the 25th and 75th percentiles. The upper and lower whisker extend to 1.5∗IQR. (C) Showing the UMAP plots from Figures 2 C and A. The nodes are colored according to the presence of neuropathy (Yes, No, NA). NA means that the specific feature was not assessed in patients. Statistical significance between the two clusters was calculated using Fisher’s exact test. Neuropathy was the only clinical feature that had a significant association with one of the clusters.

Article Snippet: All graphs and UMAP plots were created using R-studio, except for the line chart of A, which was created with GraphPad Prism version 6 for Windows.

Techniques: Control, Whisker Assay